Lien vers la base de données des tirés à part de la bibliothèque du Muséum
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Publications in international peer-reviewed journals
92. Schmid S, Pitteloud C, Heckel G, Pajkovic M, Arlettaz R, Alvarez N (in press) Spatial and temporal genetic dynamics of the endangered grasshopper Oedaleus decorus revealed by museum genomics. Ecology and Evolution.
91. Koubínová D, Dincă V, Dapporto L, Vodă R, Suchan T, Vila R, Alvarez N (2017) Genomics of extreme ecological specialists: ecotypes are not associated with genetic divergence in Maculinea alcon parasitic butterflies. Scientific Reports, 7:13752. https://doi.org/10.1038/s41598-017-12938-8
90. Larsen A, Alvarez N, Sperisen C, Lane SN (2017) Biotic drivers of river and floodplain geomorphology – new molecular methods for assessing present-day and past biota. Earth Surface Exchanges. https://doi.org/10.1002/esp.4238
89. Pellissier L, Kostikova A, Litsios G, Salamin N, Guisan A, Alvarez N (2017) Higher rate of protein coding sequence evolution and species diversification in the Lycaenids. Frontiers in Ecology and Evolution https://doi.org/10.3389/fevo.2017.00090.
88. Suchan T, Espíndola A, Emerson BC, Gori K, Dessimoz C, Arrigo N, Alvarez N (2017) Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study. Molecular Phylogenetics and Evolution, 114:189-198. https://doi.org/10.1016/j.ympev.2017.06.012
87. Kébé K, Alvarez N, Tuda M, Arnqvist G, Fox CW, Sembène M, Espíndola A (2017) Global phylogeography of the insect pest Callosobruchus maculatus L. (Coleoptera: Bruchinae) relates to the history of its main host, Vigna unguiculata L. Journal of Biogeography, 44: 2515–2526. https://doi.org/10.1111/jbi.13052
86. Ghazi Soltani G, Bénon D, Alvarez N, Praz CJ (2017) When different contact zones within the same complex tell different stories - integrative taxonomy of the Megachile concinna-species complex (Hymenoptera, Megachilidae). Biological Journal of the Linnean Society. https://doi.org/10.1093/biolinnean/blx023
85. Schmid S, Genevest R, Gobet E, Suchan T, Sperisen C, Tinner W, Alvarez N (2017) HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Methods in Ecology and Evolution, 8: 1374–1388. https://doi.org/10.1111/2041-210X.12785
84. Pitteloud C, Arrigo N, Suchan T, Mastretta-Yanes A, Buerki S, Vila R, Dinca V, Hernandez-Roldan JL, Chittaro Y, Fumagalli L, Pellissier L, Alvarez N (2017) Climatic niche evolution is faster in sympatric than allopatric lineages of the butterfly genus Pyrgus. Proceedings of the Royal Society B, 284: 20170208. https://dx.doi.org/10.1098/rspb.2017.0208
83. Gueuning M, Rutschmann S, Suchan T, Gattolliat J-L, Jamsari A, Kamil AI, Pitteloud C, Buerki S, Balke M, Sartori M, Alvarez N (2017) Elevation in tropical sky islands as the common driver in structuring genes and communities of freshwater organisms. Scientific Reports. https://doi.org/10.1038/s41598-017-16069-y
82. Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W (2017) Large-scale phylogeny of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society, 184: 32-45. https://doi.org/10.1093/botlinnean/box013
81. García-Olivares V, López H, Alvarez N, Machado A, Emerson BC (2017) Evidence for mega-landslides as drivers of island colonisation. Journal of Biogeography, 44: 1053–1064. HTTPS://DOI.ORG/10.1111/jbi.12961
80. Salgado AS, Suchan T, Pellissier L, Rasmann S, Ducrest A-L, Alvarez N (2016) Differential expression of defense compounds in a plant-herbivore interaction along elevation. Royal Society Open Science 3: 160226. https://doi.org/10.1098/rsos.160226
79. Guangpeng R, Mateo RG, Liu J, Suchan T, Alvarez N, Guisan A, Conti E, Salamin N (2017) Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on RAD sequencing. New Phytologist, 213, 1500–1512. https://doi.org/10.1111/nph.14221
78. Triponez Y, Şepitci B, Alvarez N (2016) Genome fingerprinting confirms the species status of the Loosestrifes Lysimachia punctata and L. verticilata. Plant Ecology and Evolution, 149: 335-338. https://doi.org/10.5091/plecevo.2016.1126
77. Arrigo N, de La Harpe M, Litsios G, Zozomova J, Španiel S, Marhold K, Barker M, Alvarez N (2016) Hybridization as a driver of climatic niche evolution in Alyssum montanum (Brassicaceae). American Journal of Botany 103: 1348-1357. HTTPS://DOI.ORG/10.3732/ajb.1500368
76. Gori K, Suchan T, Alvarez N, Goldman N, Dessimoz C (2016) Clustering genes of common evolutionary history. Molecular Biology and Evolution 33: 1590-1605. HTTPS://DOI.ORG/10.1093/molbev/msw038
75. Suchan T, Pitteloud C, Gerasimova N, Kostikova A, Schmid S, Arrigo N, Pajkovic M, Ronikier M, Alvarez N (2016) Hybridization capture using RAD probes (hyRAD), a new tool for performing genomic analyses on collection specimens. PLoS ONE 11: e0151651. HTTPS://DOI.ORG/10.1371/journal.pone.0151651
74. Pellissier L, Eidesen PB, Ehrich D, Schönswetter P, Tribsch A, Westergaard K, Alvarez N, Guisan A, Zimmermann NE, Normand S, Vittoz P, Luoto M, Damgaard C, Brochmann C, Wisz MS, Alsos IG (2016) Past climate-driven range shifts and population genetic diversity in Arctic plants. Journal of Biogeography 43: 461–470. HTTPS://DOI.ORG/10.1111/jbi.12657
73. Kébé K, Alvarez N, Espíndola A, Justy F, Olivieri I, Sembène M (2016) Insights into African genetic structure of the insect cowpea pest Callosobruchus maculatus (F.) (Coleoptera: Chrysomelidae: Bruchinae). Journal of Pest Science 89:449–458. HTTPS://DOI.ORG/10.1007/s10340-015-0688-5
72. Delplancke M, Yazbek M, Arrigo N, Espíndola A, Joly H, Alvarez N (2016) Combining conservative and variable markers to infer the evolutionary history of Prunus subgen. Amygdalus sl under domestication. Genetic Resources and Crop Evolution 63:221–234. HTTPS://DOI.ORG/10.1007/s10722-015-0242-6
71. Kenyon SG, Hansson C, Buerki S, Alvarez N*, Benrey B* (2015) Uncovering cryptic parasitoid diversity in Horismenus (Chalcidoidea, Eulophidae). PLoS ONE 10: e136063. HTTPS://DOI.ORG/10.1371/journal.pone.0136063 * These authors have jointly supervised this work and are considered joint last authors.
70. Suchan T, Alvarez N (2015) Fifty years after Ehrlich and Raven, is there support for plant-insect coevolution as a major driver of species diversification? Entomologia experimentalis et applicata 157: 98–112. HTTPS://DOI.ORG/10.1111/eea.12348
69. Suchan T, Beauverd M, Trim N, Alvarez N (2015). Asymmetrical nature of the Trollius-Chiastocheta interaction: insights into the evolution of nursery pollination systems. Ecology and Evolution 5: 4766-4777. HTTPS://DOI.ORG/10.1002/ece3.1544
68. Triponez Y, Arrigo N, Espindola A, Alvarez N (2015) Decoupled post-glacial history in mutualistic plant-insect interactions: insights from the yellow loosestrife Lysimachia vulgaris and its associated oil-collecting bees (Macropis europaea and M. fulvipes). Journal of Biogeography 42: 630-640. HTTPS://DOI.ORG/10.1111/jbi.12456
67. Mastretta-Yanes A, Arrigo N, Alvarez N, Jorgensen TH, Piñero D, Emerson BC (2015) RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference. Molecular Ecology Resources 15: 28-41. HTTPS://DOI.ORG/10.1111/1755-0998.12291
66. Pajkovic M, Lappe S, Barman R, Parisod C, Neuenschwander S, Goudet J, Alvarez N, Guadagnuolo R, Felber F, Arrigo N (2014) Wheat alleles introgress into selfing wild relatives: empirical estimates from Approximate Bayesian Computation in Aegilops triuncialis. Molecular Ecology 23: 5089-5101. HTTPS://DOI.ORG/10.1111/mec.12918
65. Mastretta-Yanes A, Zamudio S, Jorgensen TH, Arrigo N, Alvarez N, Piñero D, Emerson BC (2014) Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub. Genome Biology and Evolution 6: 2611-2624. HTTPS://DOI.ORG/10.1093/gbe/evu205
64. Espindola A, Carstens BC, Alvarez N (2014) Comparative phylogeography of mutualists and the effect of the host on the genetic structure of its partners. Biological Journal of the Linnean Society 113: 1021–1035. HTTPS://DOI.ORG/10.1111/bij.12393
63. Buerki S, Forest F, Alvarez N (2014) Proto-South East Asia as a trigger of early angiosperms diversification. Botanical Journal of the Linnean Society 174: 326–333. HTTPS://DOI.ORG/10.1111/boj.12129
62. Gugerli F, Alvarez N, Tinner W (2013) A deep dig - hindsight on Holocene plant composition from ancient environmental DNA. Molecular Ecology 22: 3433–3436. HTTPS://DOI.ORG/10.1111/mec.12356
61. Buerki S, Forest F, Stadler T, Alvarez N (2013) The abrupt climate change at the Eocene-Oligocene boundary and the emergence of South-East Asia triggered the spread of sapindaceous lineages. Annals of Botany 112: 151-160. HTTPS://DOI.ORG/10.1093/aob/mct106
60. Triponez Y, Arrigo N, Schatz B, Pellissier L, Alvarez N (2013) Morphological, ecological and genetic aspects associated with endemism in the Fly Orchid group. Molecular Ecology 22: 1431-1446. HTTPS://DOI.ORG/10.1111/mec.12169
59. Delplancke M*, Alvarez N*, Benoit L, Espíndola A, Joly HI, Neuenschwander S, Arrigo N (2013) Evolutionary history of almond trees domestication in the Mediterranean basin. Molecular Ecology 22: 1092-1104. * These authors have contributed equally and are considered joint first authors. HTTPS://DOI.ORG/10.1111/mec.12129
58. Pellissier L, Alvarez N, Espíndola A, Pottier J, Dubuis A, Pradervand J-N, Guisan A (2013) Phylogenetic alpha and beta diversities of butterfly communities correlate with climate in the western Swiss Alps. Ecography 36: 541-550. HTTPS://DOI.ORG/10.1111/j.1600-0587.2012.07716.x
57. Taberlet P, Zimmermann NE, Englisch T, Tribsch A, Holderegger R, Alvarez N, Niklfeld H, Coldea C, Mirek Z, Moilanen A, Ahlmer W, Ajmone Marsan P, Bona E, Bovio M, Choler P, Cieślak E, Colli L, Cristea V, Dalmas J-P, Frajman B, Garraud L, Gaudeul M, Gielly L, Gutermann W, Jogan N, Kagalo AA, Korbecka G, Küpfer P, Lequette B, Roman Letz D, Manel S, Mansion G, Marhold K, Martini F, Negrini R, Niño F, Paun O, Pellecchia M, Perico G, Piękoś-Mirkowa H, Prosser F, Puşcaş M, Ronikier M, Scheuerer M, Schneeweiss GM, Schönswetter P, Schratt-Ehrendorfer L, Schüpfer F, Selvaggi A, Steinmann K, Thiel-Egenter C, van Loo M, Winkler M, Wohlgemuth T, Wraber T, Gugerli F, IntraBioDiv Consortium (2012) Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecology Letters 15: 1439-1448. HTTPS://DOI.ORG/10.1111/ele.12004
56. Pellissier L, Litsios G, Guisan A, Alvarez N (2012) Molecular substitution rate increases in myrmecophilous lycaenid butterflies (Lepidoptera). Zoologica Scripta 41: 651-658. HTTPS://DOI.ORG/10.1111/j.1463-6409.2012.0056.x
55. Bothwell H, Bisbing S, Crawford L, Therkildsen NO, Alvarez N, Holderegger R, Manel S (2013) Identifying genetic signatures of selection in a non-model species, alpine gentian (Gentiana nivalis L.), using a landscape genetic approach. Conservation Genetics 14: 467-481. HTTPS://DOI.ORG/10.1007/s10592-012-0411-5
54. Manel S, Gugerli F, Thuiller W, Alvarez N, Legendre P, Holderegger R, Gielly L, Taberlet P, Intrabiodiv consortium (2012) Broad-scale adaptive genetic variation in alpine plants is mainly driven by temperature and precipitation. Molecular Ecology 21: 3729-3738. HTTPS://DOI.ORG/10.1111/j.1365-294X.2012.05656.x
53. Alvarez N, Manel S, Schmitt T IntraBioDiv Consortium, (2012) Contrasting diffusion of Quaternary gene pools across Europe: The case of the arctic-alpine Gentiana nivalis L. (Gentianaceae). Flora 207: 408-413. HTTPS://DOI.ORG/10.1016/j.flora.2012.03.006
52. Espíndola A, Buerki S, Jacquier A, Ježek J, Alvarez N (2012) Phylogenetic relationships in the subfamily Psychodinae (Diptera, Psychodidae). Zoologica Scripta 41: 489–498. HTTPS://DOI.ORG/10.1111/j.1463-6409.2012.00544.x
51. Espíndola A, Pellissier L, Hordijk W, Maiorano L, Guisan A, Alvarez N (2012) Predicting present and future intra-specific genetic structure through niche hindcasting across 24 millennia. Ecology Letters 15: 649–657. HTTPS://DOI.ORG/10.1111/j.1461-0248.2012.01779.x
50. Jay F, Manel S, Alvarez N, Durand E, Thuiller W, Holderegger R, Taberlet P, Francois O (2012) Forecasting changes in population genetic structure of Alpine plants in response to global warming. Molecular Ecology 21: 2354–2368. HTTPS://DOI.ORG/10.1111/j.1365-294X.2012.05541.x
49. Borer M, Buerki S, Arrigo N, Naisbit RE, Alvarez N (2012) Climate oscillations and species interactions: large-scale congruence but regional differences in the phylogeographic structures of an alpine plant and its monophagous insect. Journal of Biogeography 39: 1487-1498. HTTPS://DOI.ORG/10.1111/j.1365-2699.2012.02703.x
48. Delplancke M, Alvarez N, Espíndola A, Joly H, Benoit L, Brouck E, Arrigo N (2012) Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers. Evolutionary Applications 5: 317-329. HTTPS://DOI.ORG/10.1111/j.1752-4571.2011.00223.x
47. Espíndola A, Buerki S, Alvarez N (2012) Ecological and historical drivers of diversification in the fly genus Chiastocheta Pokorny. Molecular Phylogenetics and Evolution 63: 466–474. HTTPS://DOI.ORG/10.1016/j.ympev.2012.01.018
46. Revel N, Alvarez N, Gibernau M, Espíndola A (2012) Investigating the relationship between pollination strategies and the size-advantage model in zoophilous plants using the reproductive biology of Arum cylindraceum and other European Arum species as case studies. Arthropod Plant Interactions 6: 35-44. HTTPS://DOI.ORG/10.1007/s11829-011-9164-1
45. Boucher F, Thuiller W, Roquet C, Douzet R, Aubert S, Alvarez N, Lavergne S (2012) Reconstructing the origin of high-alpine niches and cushion life form in the genus Androsace s.l. (Primulaceae). Evolution 66: 1255–1268. HTTPS://DOI.ORG/10.1111/j.1558-5646.2011.01483.x
44. Espíndola A, Alvarez N (2011) Comparative phylogeography in a specific and obligate pollination antagonism. PLoS ONE 6: e28662. HTTPS://DOI.ORG/10.1371/journal.pone.0028662
43. Borer M, van Noort T, Arrigo N, Buerki S, Alvarez N (2011) Does a shift in host plants trigger the speciation in the Alpine leaf beetle Oreina speciosissima (Coleoptera, Chrysomelidae)? BMC Evolutionary Biology 11:310. HTTPS://DOI.ORG/10.1186/1471-2148-11-310
42. Barbu L, Guinand C, Bergmüller R, Alvarez N, Bshary R (2011) Cleaning wrasse species vary with respect to dependency on the mutualism and behavioural adaptations in interactions. Animal Behaviour 82: 1067-1074. HTTPS://DOI.ORG/10.1016/j.anbehav.2011.07.043
41. Bassin L, Alvarez N, Pellissier L, Triponez Y (2011) Ecological niche overlap in sister species: how do oil‐collecting bees Macropis europaea and M. fulvipes (Hymenoptera: Melittidae) avoid competition and hybridization? Apidologie 42: 579-595. HTTPS://DOI.ORG/10.1007/s13592-011-0067-z
40. Triponez Y, Borer M, Buerki S, Naisbit RE, Rahier M, Alvarez N (2011) Discordances between phylogenetic and morphological patterns of alpine leaf beetles attest for intricate history of lineages in postglacial Europe. Molecular Ecology 20: 2442–2463. HTTPS://DOI.ORG/10.1111/j.1365-294X.2011.05096.x
39. Espíndola A, Pellissier L, Alvarez N (2011) Variation in the proportion of flower visitors of A. maculatum along its distributional range in relation with community‐based climatic niche analysis. Oikos 120: 728‐734. HTTPS://DOI.ORG/10.1111/j.1600-0706.2010.18937.x
38. Thiel‐Egenter C*, Alvarez N*, Holderegger R, Tribsch A, Englisch T, Wohlgemuth T, Ahlmer WR, Colli L, Dalmas JP, Gaudeul M, Gielly L, Jogan N, Lequette B, Linder HP, Martini F, Negrini R, Niklfeld H, Pellecchia M, Prosser F, Rioux D, Rossi P, Scheuerer M, Schönswetter P, Selvaggi A, vanLoo M, Winkler M, IntraBioDiv Consortium, Gugerli F (2011) Break zones in the distribution of alleles and species in Alpine plants. Journal of Biogeography 38: 772–782. * These authors have contributed equally and are considered joint first authors. HTTPS://DOI.ORG/10.1111/j.1365-2699.2010.02441.x
37. Buerki S, Forest F, Alvarez N, Nylander JAA, Arrigo N, Sanmartín I (2011) An evaluation of new parsimony‐based versus parametric inference methods in biogeography: a case study using the worldwide plant soapberry family (Sapindaceae). Journal of Biogeography 38: 531‐550. HTTPS://DOI.ORG/10.1111/j.1365-2699.2010.02432.x
36. Kébé K, Alvarez N, Thiaw C, Sembéné M (2011) Les Chalcidiens (Hymenoptera, Chalcidoidea) associés au genre Ficus spp. (Moracee) du Sénégal: répartition, abondance et diversité. Bulletin de la Société vaudoise des Sciences naturelles 92: 137-152.
35. Born C, Alvarez N, Ossari S, Muloko N, McKey D, Wickings EJ, Hossaert‐McKey M, Chevallier M‐H (2011) Insights into the biogeographical history of the Lower Guinean Forest Domain: evidence for the role of refugia in the intraspecific differentiation of Aucoumea klaineana. Molecular Ecology 20: 131‐142. HTTPS://DOI.ORG/10.1111/j.1365-294X.2010.04919.x
34. Buerki S, Forest F, Salamin N, Alvarez N (2011) Comparative Performance of Supertree Algorithms in Large Data Sets using the Soapberry Family (Sapindaceae) as a case study. Systematic Biology 60: 32‐44. HTTPS://DOI.ORG/10.1093/sysbio/syq057
33. Favre A, Yuan Y‐M, Küpfer P, Alvarez N (2010) Phylogeny of subtribe Gentianinae (Gentianaceae): biogeographic inferences despite limitations in temporal calibration points. Taxon 59: 1701‐1711. link
32. Borer M, Alvarez N, Buerki S, Margraf N, Rahier M, Naisbit RE (2010) The phylogeography of an alpine leaf beetle: Divergence within Oreina elongata spans several ice ages. Molecular Phylogenetics and Evolution 57: 703‐709. HTTPS://DOI.ORG/10.1016/j.ympev.2010.08.017
31. Jourdie V, Virla E, Murillo H, Bento JMS, Turlings TCJ, Alvarez N (2010) Molecular phylogeography of Chelonus insularis (Hymenoptera: Braconidae) and Campoletis sonorensis (Hymenoptera: Ichneumonidae), two primary parasitoids of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae). Annals of the Entomological Society of America 103: 742‐749. HTTPS://DOI.ORG/10.1603/AN09156
30. Arrigo N, Felber F, Parisod C, Buerki S, Alvarez N, David J, Guadagnuolo R (2010) Origin and expansion of the allotetraploid Aegilops geniculata Roth, a wild relative of wheat. New Phytologist 187: 1170–1180. HTTPS://DOI.ORG/10.1111/j.1469-8137.2010.03328.x
29. Buerki S, Callmander MW, Alvarez N, Razafimandimbison SG, Küpfer P, Lowry II PP (2010) Phylogeny and circumscription of Sapindaceae revisited: molecular sequence data, morphology and biogeography support recognition of a new family, Xanthoceraceae. Plant Ecology and Evolution 143: 1–20. HTTPS://DOI.ORG/10.5091/plecevo.2010.437
28. Restoux G, Hossaert‐McKey M, Benrey B, Alvarez N (2010) The effect of host plant and isolation on the genetic structure of phytophagous insects: A preliminary study on a bruchid beetle. European Journal of Entomology 107: 299‐304. link
27. Espíndola A, Buerki S, Bedalov M, Küpfer P, Alvarez N (2010) New insights into the phylogenetics and biogeography of Arum (Araceae): unravelling its evolutionary history. Botanical Journal of the Linnean Society 163: 14‐32. HTTPS://DOI.ORG/10.1111/j.1095-8339.2010.01049.x
26. Jourdie V*, Alvarez N*, Molina‐Ochoa J, Williams T, Bergvinson D, Benrey B, Turlings T, Franck P (2010) Population genetic structure of two primary parasitoids of Spodoptera frugiperda (Lepidopotera), Chelonus insularis and Campoletis sonorensis (Hymenoptera): to what extent is the host plant important? Molecular Ecology 19: 2168‐2179. * These authors have contributed equally and are considered joint first authors. HTTPS://DOI.ORG/10.1111/j.1365-294X.2010.04625.x
25. Selosse M‐A, Dubois M‐P, Alvarez N (2009) Do Sebacinales commonly associate with plant roots? Mycological Research 113: 1062‐1069. HTTPS://DOI.ORG/10.1016/j.mycres.2009.07.004
24. Burnier J, Buerki S, Arrigo N, Küpfer P, Alvarez N (2009) Genetic structure and evolution of Alpine polyploid complexes: Ranunculus kuepferi (Ranunculaceae) as a case study. Molecular Ecology 18: 3730‐3744. HTTPS://DOI.ORG/10.1111/j.1365-294X.2009.04281.x
23. Buerki S, Callmander MW, Schüpfer F, Ravokatra M, Alvarez N (2009) Malagasy Dracaena Vand. ex L. (Ruscaceae): an investigation of discrepancies between morphological features and spatial genetic structure at a small evolutionary scale. Plant Systematics and Evolution 280: 15‐28. HTTPS://DOI.ORG/10.1007/s00606-009-0162-z
22. Alvarez N, Thiel‐Egenter C, Tribsch A, Holderegger R, Manel S, Taberlet P, Küpfer P, Brodbeck S, Gaudeul M, Gielly L, Mansion G, Negrini R, Paun O, Pellecchia M, Rioux D, Schönswetter P, Schüpfer F, Van Loo M, Winkler M, Gugerli F, IntraBioDiv Consortium (2009) History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants. Ecology Letters 12: 632‐640. HTTPS://DOI.ORG/10.1111/j.1461-0248.2009.01312.x
21. Buerki S, Forest F, Acevedo‐Rodríguez P, Callmander MW, Nylander JAA, Harrington M, Sanmartín I, Küpfer P, Alvarez N (2009) Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae). Molecular Phylogenetics and Evolution 51: 238‐258. HTTPS://DOI.ORG/10.1016/j.ympev.2009.01.012
20. Arrigo N, Ehrich D, Tuszynski J, Gerdes T, Alvarez N (2009) Evaluating the impact of scoring parameters on the structure of intra‐specific genetic variation using RawGeno, an R package for automating AFLP scoring. BMC Bioinformatics 10: 33. HTTPS://DOI.ORG/10.1186/1471-2105-10-33
19. Jourdie V, Alvarez N, Turlings T, Franck P (2009) Isolation and characterization of polymorphic microsatellite loci in two primary parasitoids of the noctuid Spodoptera frugiperda: Chelonus insularis and Campoletis sonorensis (Hymenoptera). Molecular Ecology Resources 9: 171‐173. HTTPS://DOI.ORG/10.1111/j.1755-0998.2008.02408.x
18. Thiel‐Egenter C, Gugerli F, Alvarez N, Brodbeck S, Cieslak E, Colli L, Englisch T, Gaudeul M, Gielly L, Korbecka G, Negrini R, Paun O, Pellecchia M, Rioux D, Ronikier M, Schönswetter P, Schüpfer F, Taberlet P, Tribsch A, van Loo M, Winkler M, Holderegger R, IntraBioDiv Consortium (2009) Effects of species traits on the genetic diversity of high‐mountain plants: a multi‐species study across the Alps and the Carpathians. Global Ecology and Biogeography 18: 78‐87. HTTPS://DOI.ORG/10.1111/j.1466-8238.2008.00421.x
17. Nadir Alvarez, Nils Arrigo, IntraBioDiv Consortium (2008) SIMIL: an R (CRAN) scripts collection for computing genetic structure similarities based on STRUCTURE 2 outputs. Molecular Ecology Resources 8: 757-762. HTTPS://DOI.ORG/10.1111/j.1755-0998.2007.02076
16. Jourdie V, Alvarez N, Turlings T (2008) Identification of seven species of hymenopteran parasitoids of Spodoptera frugiperda J.E. Smith (Lepidoptera: Noctuidae), using PCR amplification and restriction enzymes. Agricultural and Forest Entomology 10: 129‐136. HTTPS://DOI.ORG/10.1111/j.1461-9563.2008.00362.x
15. Kergoat GJ, Alvarez N (2008) Assessing the phylogenetic usefulness of a previously neglected morphological structure through elliptic Fourier analyses: a case study in Bruchus seed‐beetles (Coleoptera: Chrysomelidae: Bruchinae: Bruchini). Systematic Entomology 33: 289‐300. HTTPS://DOI.ORG/10.1111/j.1365-3113.2007.00405.x
14. Alvarez N, Hossaert‐McKey M, Restoux G, Delgado‐Salinas A, Benrey B (2007) Anthropogenic effects on population genetics of phytophagous insects associated with domesticated plants. Evolution 61: 2986–2996. HTTPS://DOI.ORG/10.1111/j.1558-5646.2007.00235.x
13. Triponez Y, Naisbit RE, Jean‐Denis JB, Rahier M, Alvarez N (2007) Genetic and environmental sources of variation in the autogenous chemical defence of a leaf beetle. Journal of Chemical Ecology 33: 2011–2027. HTTPS://DOI.ORG/10.1007/s10886-007-9351-9
12. Alvarez N, Benrey B, Hossaert‐McKey M, Grill A, McKey D, Galtier N (2006) Phylogeographic support for horizontal gene transfer involving sympatric bruchid species. Biology Direct 1: 21. HTTPS://DOI.ORG/10.1186/1745-6150-1-21
11. Alvarez N, Mercier L, Hossaert‐McKey M, Contreras‐Garduño J, Kunstler G, Aebi A, Benrey B (2006) Ecological distribution and niche segregation of two sibling species of bean beetles, Acanthoscelides obtectus Say and A. obvelatus Bridwell. Ecological Entomology 31: 582–590. HTTPS://DOI.ORG/10.1111/j.1365-2311.2006.00817.x
10. Grill A, Gkiokia E, Alvarez N (2006) Evolutionary history and patterns of differentiation among European Maniola butterflies (Lepidoptera: Satyrinae). European Journal of Entomology 103: 613–618. https://doi.org/10.14411/eje.2006.082
9. Alvarez N, Romero Napoles J, Anton K‐W, Benrey B, Hossaert‐McKey M (2006) Phylogenetic relationships in the Neotropical bruchid genus Acanthoscelides Schilsky. Journal of Zoological Systematics and Evolutionary Research 44: 63–74. HTTPS://DOI.ORG/10.1111/j.1439-0469.2005.00344.x
8. Kergoat GJ*, Alvarez N*, Hossaert‐McKey M, Faure N, Silvain J‐F (2005) Parallels in the evolution of the two largest seed‐beetle genera (Coleoptera: Bruchidae). Molecular Ecology 14: 4003–4021. * These authors have contributed equally and are considered joint first authors. HTTPS://DOI.ORG/10.1111/j.1365-294X.2005.02702.x
7. Alvarez N, McKey D, Hossaert‐McKey M, Born C, Mercier L, Benrey B (2005) Ancient and recent evolutionary history of the cosmopolitan bean bruchid pest Acanthoscelides obtectus Say. Molecular Ecology 14: 1015–1024. HTTPS://DOI.ORG/10.1111/j.1365-294X.2005.02470.x
6. Alvarez N, Hossaert‐McKey M, Rasplus J‐Y, McKey D, Mercier L, Soldati L, Aebi A, Shani T, Benrey B (2005) Sibling species of bean bruchids: morphological and phylogenetic studies among Acanthoscelides obtectus Say and A. obvelatus Bridwell. Journal of Zoological Systematics and Evolutionary Research 43: 29–37. HTTPS://DOI.ORG/10.1111/j.1439-0469.2004.00286.x
5. Alvarez N, Garine E, Khasah C, Dounias E, Hossaert‐McKey M, McKey D (2005) Farmers’ practices, population processes, and conservation of agricultural biodiversity on‐farm: a case study of sorghum among the Duupa in sub‐sahelian Cameroon. Biological Conservation 121: 533–543. HTTPS://DOI.ORG/10.1016/j.biocon.2004.05.021
4. Aebi A, Shani T, Butcher RDJ, Alvarez N, Risterucci A‐M, Benrey B (2005) Isolation and characterization of polymorphic microsatellite markers in Zabrotes subfasciatus Boheman (Coleoptera: Bruchidae). Molecular Ecology Notes 4: 752–754. HTTPS://DOI.ORG/10.1111/j.1471-8286.2004.00808.x
3. Aebi A, Alvarez N, Butcher RDJ, Hansson C, Risterucci A‐M, Benrey B (2004) Microsatellite markers in a complex of Horismenus sp. (Hymenoptera: Eulophidae), parasitoids of bruchid beetles. Molecular Ecology Notes 4: 707‐709. HTTPS://DOI.ORG/10.1111/j.1471-8286.2004.00766.x
2. Alvarez N, Born C, Risterucci A‐M, Sourrouille P, Benrey B, Hossaert‐McKey M (2004) Isolation and characterization of polymorphic microsatellite loci in Acanthoscelides obtectus Say (Coleoptera: Bruchidae). Molecular Ecology Notes 4: 683–685. HTTPS://DOI.ORG/10.1111/j.1471-8286.2004.00784.x
1. Alvarez N, Aebi A, Risterucci A‐M, Hossaert‐McKey M, Benrey B (2003) Isolation and characterization of polymorphic microsatellite loci in Acanthoscelides obvelatus Bridwell (Coleoptera: Bruchidae). Molecular Ecology Notes 3: 12–14. HTTPS://DOI.ORG/10.1046/j.1471-8286.2003.00335.x
